Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs11658079 chr17:692520 C/T 5.63E-5 134 20.6 25.47 45.83 KM Plot
TGCT rs11662050 chr18:32784946 C/T 9.74E-5 132 17.1 27.1 50.97 KM Plot
TGCT rs116661759 chr6:15251537 G/A 3.36E-5 133 37.7 45.93 NA KM Plot
TGCT rs117017165 chr16:67646311 G/A 0 133 46.07 24.1 0.57 KM Plot
TGCT rs11718276 chr3:125628689 A/G 2.9E-6 130 48.87 36.37 47.27 KM Plot
TGCT rs11730410 chr4:541595 C/T 9.94E-7 134 41.27 47.68 53.82 KM Plot
TGCT rs11739552 chr5:116553253 A/G 1.9E-13 131 46.3 28.8 17.1 KM Plot
TGCT rs11740602 chr5:1822606 G/A 5.89E-6 133 42.27 43.9 24.73 KM Plot
TGCT rs11740753 chr5:1812413 G/A 5.72E-6 133 42.27 43.9 24.73 KM Plot
TGCT rs11741881 chr5:1832240 T/C 7.75E-9 129 42.18 51.67 24.73 KM Plot
TGCT rs117424242 chr14:78131127 G/A 8.81E-5 132 45.47 38.2 18.07 KM Plot
TGCT rs117447021 chr16:67669455 G/A 0 133 46.07 24.1 0.57 KM Plot
TGCT rs11746186 chr5:116553503 G/A 1.9E-13 131 46.3 28.8 17.1 KM Plot
TGCT rs117473643 chr7:128698186 G/C 1.87E-5 133 42.18 30.3 17.1 KM Plot
TGCT rs11748427 chr5:1824205 C/T 5.89E-6 133 42.27 43.9 24.73 KM Plot